ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Huang et al., original name: sja-miR-3119
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGATGTTCACAGTGGGATTTT miRNA* CGTCCTATTTGGGACTCATCGGCT mismatches: 6 bulges: 2 |
pre-miRNA
AGGACGAGCGTTTCGTCCTATTTGGGACTCATCGGCTTGATGTACGTGCATCCCAATGTTGATGTTCACAGTGGGATTTTAACTCAGTCC
dot-bracket secondary structure
.(((((((......((((((((...((..(((((((..(((((....))))).....))))))).))..)))))))).....))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGACGAGCGTTTCGTCCTATTTGGGACTCATCGGCTTGATGTACGTGCATCCCAATGTTGATGTTCACAGTGGGATTTTAACTCAGTCC
dot-bracket secondary structure
.(((((((......((((((((...((..(((((((..(((((....))))).....))))))).))..)))))))).....))).))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM Hammerhead_1: 0.00000000008 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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