ABOUT THIS RECORDspecies: Zamia vazquezii
miRNA family: MIR535
source: microPC, original name: miR535
Taxonomy by NCBI:
Zamia vazquezii Zamia Zamiaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACGACGAGAGAGAGCACGC miRNA* GTGTTCTCGTCCCGTTGTCA mismatches: 2 bulges: 1 |
pre-miRNA
TGACGACGAGAGAGAGCACGCTTGTAGACAATAATATGATTTTGGACGGTTATTACAACGTATTTCTGTGTACATGCGTGTTCTCGTCCCGTTGTCA
dot-bracket secondary structure
.(((((((.((((((((((((.((((.(((..((((((...(((...........)))))))))..))).)))).)))))))))).)).))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACGACGAGAGAGAGCACGCTTGTAGACAATAATATGATTTTGGACGGTTATTACAACGTATTTCTGTGTACATGCGTGTTCTCGTCCCGTTGTCA
dot-bracket secondary structure
.(((((((.((((((((((((.((((.(((..((((((...(((...........)))))))))..))).)))).)))))))))).)).))))))).
SIMILARITIES| miRBase rco-MIR535: 0.00007 PMRD rco-miR535: 0.00007 microPC miR535: 3e-50 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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