ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIR168
source: microPC, original name: miR168
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGA mismatches: 3 bulges: 0 |
pre-miRNA
TCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAATTATAAAAAGAAAGAGAATTGGATC
CCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..((((..(....((((((((..((((((((......))))))))..))).)))))......).....))))..).))
))).)))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAATTATAAAAAGAAAGAGAATTGGATC
CCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..((((..(....((((((((..((((((((......))))))))..))).)))))......).....))))..).))
))).)))))))))).)))
SIMILARITIES| miRBase ptc-MIR168b: 1e-62 PMRD ptc-miR168b: 1e-62 microPC miR168: 1e-62 | UniProt no hits RFAM MIR168: 2e-61 |
Identical with: ptc-miR168b from PMRD (MNEST051651) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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