miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia

ABOUT THIS RECORD

ID: MNEST045136
species: Lactuca sativa
miRNA family: MIR396
source: microPC, original name: miR396

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TTCCACAGCTTTCTTGAACTG

miRNA*
GTTCAATAAAGCTGTGGGA

mismatches: 2
bulges: 0

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pre-miRNA
TTCCACAGCTTTCTTGAACTGCATGGTTCAACATTGATCTATTCGAATCTTTGCTGTTCAATAAAGCTGTGGGA

dot-bracket secondary structure
((((((((((((.((((((.(((.(((((...............)))))..))).)))))).))))))))))))

UniProt no hits

RFAM MIR396: 0.000004

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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