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Species belonging to selected taxon:
Barnadesia spinosa
,
Cichorium intybus
,
Gerbera hybrid cultivar
,
Guizotia abyssinica
,
Helianthus argophyllus
,
Helianthus ciliaris
,
Helianthus exilis
,
Helianthus paradoxus
,
Helianthus petiolaris
,
Helianthus tuberosus
,
Lactuca perennis
,
Lactuca saligna
,
Lactuca sativa
,
Lactuca serriola
,
Lactuca virosa
,
Parthenium argentatum
,
Taraxacum kok-saghyz
,
Taraxacum officinale
,
Zinnia violacea
,
Carthamus tinctorius
,
Centaurea maculosa
,
Centaurea solstitialis
,
Cichorium endivia
,
Artemisia annua
,
Helianthus annuus
ABOUT THIS RECORD
ID:
MNEST045136
species:
Lactuca sativa
miRNA family:
MIR396
source:
microPC, original name:
miR396
Taxonomy by NCBI:
Lactuca sativa
Lactuca
Lactucinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTG
miRNA*
GTTCAATAAAGCTGTGGGA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTCCACAGCTTTCTTGAACTG
CATGGTTCAACATTGATCTATTCGAATCTTTGCT
GTTCAATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((((.(
((.(((((...............)))))..))).
)))))).))))))))))))
SIMILARITIES
miRBase
aqc-MIR396a
:
0.00000001
PMRD
aqc-miR396a
:
0.00000001
microPC
miR396
:
1e-36
UniProt
no hits
RFAM
MIR396: 0.000004
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record