ABOUT THIS RECORDspecies: Lactuca sativa
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGA mismatches: 2 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTGCATGGTTCAACATTGATCTATTCGAATCTTTGCTGTTCAATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((((.(((.(((((...............)))))..))).)))))).))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACAGCTTTCTTGAACTGCATGGTTCAACATTGATCTATTCGAATCTTTGCTGTTCAATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.((((((.(((.(((((...............)))))..))).)))))).))))))))))))
SIMILARITIES| miRBase aqc-MIR396a: 0.00000001 PMRD aqc-miR396a: 0.00000001 microPC miR396: 1e-36 | UniProt no hits RFAM MIR396: 0.000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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