ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGT
ACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
dot-bracket secondary structure
......((.(((((.(((((((.(((((((((.((((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).)))).
..))))))).)))).)))).))))))))).))))))).))))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGT
ACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC
dot-bracket secondary structure
......((.(((((.(((((((.(((((((((.((((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).)))).
..))))))).)))).)))).))))))))).))))))).))))).)).....
SIMILARITIES| miRBase osa-MIR160d: 7e-77 PMRD osa-miR160d: 7e-77 microPC miR160: 1e-69 | UniProt no hits RFAM mir-160: 5e-72 | most similar mature miRNAs |
Identical with: osa-miR160n from PMRD (MNEST048833) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
