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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004526
species: Oryza sativa
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA

miRNA*
GCGTGCGAGGAGCCAAGCATG

mismatches: 2
bulges: 0

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pre-miRNA
AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGT
ACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC


dot-bracket secondary structure
......((.(((((.(((((((.(((((((((.((((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).)))).
..))))))).)))).)))).))))))))).))))))).))))).)).....



SIMILARITIES
miRBase osa-MIR160d: 7e-77

PMRD osa-miR160d: 7e-77

microPC miR160: 1e-69
UniProt no hits

RFAM mir-160: 5e-72
most similar mature miRNAs

Identical with: osa-miR160n from PMRD (MNEST048833)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence





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