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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004526
species: Oryza sativa
miRNA family: MIR160
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCCA

miRNA*
 GCGTGCGAGGAGCCAAGCATG

mismatches: 2
bulges: 0
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pre-miRNA
 AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGT
ACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC

dot-bracket secondary structure
......((.(((((.(((((((.(((((((((.((((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).)))).
..))))))).)))).)))).))))))))).))))))).))))).)).....


SIMILARITIES
miRBase osa-MIR160d: 7e-77

PMRD osa-miR160d: 7e-77

microPC miR160: 1e-69		UniProt no hits

RFAM mir-160: 5e-72		most similar mature miRNAs

Identical with: osa-miR160n from PMRD (MNEST048833)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence




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