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Species belonging to selected taxon:
Agrostis stolonifera
,
Allium cepa
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Dioscorea alata
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST045585
species:
Saccharum officinarum
source:
microPC, original name:
miR169
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCCAAGGATGACTTGCC
miRNA*
CAGGTTCTTCTCTTTGGCT
mismatches:
1
bulges:
3
View larger
pre-miRNA
AGCCAAGGATGACTTGCC
GGCCGATGCCTCGATCGATCCCTCATCCCCGTCCGGCCGGGAACGTCGCACGTATGTATGTATGCGTGCATATGCTGCGAAC
TGTGAGGCATCCATATCGACCGG
CAGGTTCTTCTCTTTGGCT
dot-bracket secondary structure
(((((((((.((((((((
((.((((((((((..............((((......))))....(((((((((((((((....)))))))))).)))))..
..)))))))......))).))))
))))))....)))))))))
SIMILARITIES
miRBase
ssp-MIR169
:
4e-72
PMRD
sof-miR169
:
3e-60
microPC
miR169
:
7e-77
UniProt
no hits
RFAM
MIR169_2: 0.0000001
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record