miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
ABOUT THIS RECORD
ID:
MNEST045585
species:
Saccharum officinarum
source:
microPC, original name:
miR169
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCCAAGGATGACTTGCC
miRNA*
CAGGTTCTTCTCTTTGGCT
mismatches:
1
bulges:
3
View larger
pre-miRNA
AGCCAAGGATGACTTGCC
GGCCGATGCCTCGATCGATCCCTCATCCCCGTCCGGCCGGGAACGTCGCACGTATGTATGTATGCGTGCATATGCTGCGAAC
TGTGAGGCATCCATATCGACCGG
CAGGTTCTTCTCTTTGGCT
dot-bracket secondary structure
(((((((((.((((((((
((.((((((((((..............((((......))))....(((((((((((((((....)))))))))).)))))..
..)))))))......))).))))
))))))....)))))))))
SIMILARITIES
miRBase
ssp-MIR169
:
4e-72
PMRD
sof-miR169
:
3e-60
microPC
miR169
:
7e-77
UniProt
no hits
RFAM
MIR169_2: 0.0000001
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record