miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST045662
species: Manihot esculenta
source: microPC, original name: miR171

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGATTGAGCCGCGTCAATAT

miRNA*
ATTGGCGTGCCTCAATCTAA

mismatches: 3
bulges: 0

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pre-miRNA
TATTGGCGTGCCTCAATCTAATTACATGGTTAAATGATATGTTTTAGCCAAGTACTTTTGATTGAGCCGCGTCAATAT

dot-bracket secondary structure
((((((((((.(((((((.((.(((.((((((((........)))))))).))).))..))))))).)))))))))).

UniProt no hits

RFAM MIR171_1: 0.0003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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