ABOUT THIS RECORDspecies: Manihot esculenta
source: microPC, original name: miR166
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGCTCGAG mismatches: 4 bulges: 0 |
pre-miRNA
GGGAATGTTGTCTGGCTCGAGGACTCTCTTTTGATGCTTTTACATACAGATCTAAGCATATTGATCAACTGCTAGTGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..(((.(((.(((..(((((((((..............)))))......))))..)..)).))).)))..))))))..)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGAATGTTGTCTGGCTCGAGGACTCTCTTTTGATGCTTTTACATACAGATCTAAGCATATTGATCAACTGCTAGTGTCGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..(((.(((.(((..(((((((((..............)))))......))))..)..)).))).)))..))))))..)))))))
SIMILARITIES| miRBase rco-MIR166e: 0.0000000000003 PMRD ghr-miR166b: 0.000000001 microPC miR166: 5e-52 | UniProt no hits RFAM mir-166: 0.000000000006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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