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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST045819
species:
Solanum lycopersicum
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCT
miRNA*
AGCTCCTTGAAGTCCAACA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GG
AGCTCCTTGAAGTCCAACA
AAAAATCTAACAGGTTAAATTGAGCTGCTGACCTATGGATTCCTCAGCCCTATCTATTTATGATTTCAAACATATAGAT
AGGTTTGTGGGTTTGCATATGTCAGGAGCTTTATTTTACCCTTTGTTTGATCATTTT
TTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((
((((((((..(((((((.(
((..(((.(((((((.((((.(((((.(((((.((((.(..((((((.((((((((..((((........)))))))))
))).))).)))..).)))).))))).))))).)))).)))...)))).)))..))).
)))))))..))))))))))
SIMILARITIES
miRBase
sly-MIR159
:
3e-92
PMRD
sly-miR159
:
3e-92
microPC
miR159
:
4e-97
UniProt
no hits
RFAM
MIR159: 1e-88
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
degradome data
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