miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii

ABOUT THIS RECORD

ID: MNEST046251
species: Pinus taeda
miRNA family: MIR1311
source: microPC, original name: miR1311

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCAGAGTTTTGCCAGTTCCGCC

miRNA*
CGGGCTGGCATAACTCCGCCC

mismatches: 3
bulges: 1

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pre-miRNA
GGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCC

dot-bracket secondary structure
((((((((((((.(((((.(.((((.((((......)))))))).).))))).)))))).))))))

UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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