miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST046251
species: Pinus taeda
miRNA family: MIR1311
source: microPC, original name: miR1311

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAGAGTTTTGCCAGTTCCGCC

miRNA*
CGGGCTGGCATAACTCCGCCC

mismatches: 3
bulges: 1

View larger
pre-miRNA
GGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCC

dot-bracket secondary structure
((((((((((((.(((((.(.((((.((((......)))))))).).))))).)))))).))))))


SIMILARITIES
miRBase pta-MIR1311: 6e-32

PMRD pta-miR1311: 6e-32

microPC miR1311: 0.00000005
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;