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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST046256
species: Gossypium hirsutum
source: microPC, original name: miR171

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAGCCGCGCCAATATCAC

miRNA*
 GATGTTGGTGAGGTTCAAT

mismatches: 3
bulges: 0
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pre-miRNA
 CGCGATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATCAC

dot-bracket secondary structure
)..((((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).))))))))))..


SIMILARITIES
miRBase tcc-MIR171c: 2.0E-38

PMRD ghr-miR171: 4.0E-43

microPC miR171: 2.0E-45		UniProt no hits

RFAM 1MIR171_1: 1.0E-25

Identical with: ghr-miR171 from PMRD (MNEST048497)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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