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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Limnanthes alba
,
Paullinia cupana var. sorbilis
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Tropaeolum majus
,
Carica papaya
,
Citrus clementina
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046256
species:
Gossypium hirsutum
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Gossypium hirsutum
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGCCGCGCCAATATCAC
miRNA*
GATGTTGGTGAGGTTCAAT
mismatches:
3
bulges:
0
View larger
pre-miRNA
GC
GATGTTGGTGAGGTTCAAT
CCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGAT
TGAGCCGCGCCAATATCAC
dot-bracket secondary structure
..
((((((((((.((((((((
(.((.((((..(((((((.(((...))))))))))...)).)))).)))
)))))).))))))))))..
SIMILARITIES
miRBase
tcc-MIR171c
:
2e-38
PMRD
ghr-miR171
:
4e-43
microPC
miR171
:
2e-45
UniProt
no hits
RFAM
MIR171_1: 1e-25
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record