ABOUT THIS RECORDspecies: Coffea canephora
miRNA family: MIRf744
source: miRNEST
Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAGGAGCTTTATCAGTGGG miRNA* GACAGAAGAGCTTTGCAAT mismatches: 3 bulges: 2 |
pre-miRNA
TTTATCCAGCTCCGACAGAAGAGCTTTGCAATCGTTGGATCGAAGTAGGTGCTTTCTACCCCTTCTCAAGGGATCATGCAAACTTCTATTCTCCTAGGCA
GGAGCTTTATCAGTGGGATTCAGTAGC
dot-bracket secondary structure
..........(((.((.((((((((((((.......((((.(((((...(((.......(((((...))))).....))).))))).))))......)))
.))))))).)).)).))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTTATCCAGCTCCGACAGAAGAGCTTTGCAATCGTTGGATCGAAGTAGGTGCTTTCTACCCCTTCTCAAGGGATCATGCAAACTTCTATTCTCCTAGGCA
GGAGCTTTATCAGTGGGATTCAGTAGC
dot-bracket secondary structure
..........(((.((.((((((((((((.......((((.(((((...(((.......(((((...))))).....))).))))).))))......)))
.))))))).)).)).))).........
SIMILARITIES| miRBase no hits PMRD ptc-miRf10130-akr: 8e-27 microPC no hits | UniProt sp|Q9S7Y7|XYL1_ARATH: 1e-18 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
