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Species belonging to selected taxon:

Coffea canephora



ABOUT THIS RECORD

ID: MNEST000464
species: Coffea canephora
miRNA family: MIRf744
source: miRNEST

Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCAGGAGCTTTATCAGTGGG

miRNA*
GACAGAAGAGCTTTGCAAT

mismatches: 3
bulges: 2

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pre-miRNA
TTTATCCAGCTCCGACAGAAGAGCTTTGCAATCGTTGGATCGAAGTAGGTGCTTTCTACCCCTTCTCAAGGGATCATGCAAACTTCTATTCTCCTAGGCA
GGAGCTTTATCAGTGGG
ATTCAGTAGC


dot-bracket secondary structure
..........(((.((.((((((((((((.......((((.(((((...(((.......(((((...))))).....))).))))).))))......)))
.))))))).)).)).))
).........



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10130-akr: 8e-27

microPC no hits
UniProt sp|Q9S7Y7|XYL1_ARATH: 1e-18

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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