miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST046478
species: Centaurea maculosa
miRNA family: MIR398
source: microPC, original name: miR398

Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCT

miRNA*
GAGTGATACTAAGAACACATG

mismatches: 3
bulges: 1

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pre-miRNA
GGAGTGATACTAAGAACACATGTGATGGAATGAGTGCATTGATATGCTGTATGGTACAACTCTTTGATGCACATTTTTTTTCATTTGTGTTCTCAGGTCA
CCCCT


dot-bracket secondary structure
((.(((((.((.((((((((.((((..(((...((((((..(...(.((((...)))).)...)..))))))...)))..)))).)))))))).))))))
).)).



SIMILARITIES
miRBase aqc-MIR398a: 0.000001

PMRD aqc-miR398a: 0.000001

microPC miR398: 1e-40
UniProt no hits

RFAM MIR398: 0.0004

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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