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Species belonging to selected taxon:
Carthamus tinctorius
,
Centaurea maculosa
,
Centaurea solstitialis
ABOUT THIS RECORD
ID:
MNEST046478
species:
Centaurea maculosa
miRNA family:
MIR398
source:
microPC, original name:
miR398
Taxonomy by NCBI:
Centaurea maculosa
Centaurea
Centaureinae
Cardueae
Carduoideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCT
miRNA*
GAGTGATACTAAGAACACATG
mismatches:
3
bulges:
1
View larger
pre-miRNA
G
GAGTGATACTAAGAACACATG
TGATGGAATGAGTGCATTGATATGCTGTATGGTACAACTCTTTGATGCACATTTTTTTTCATT
TGTGTTCTCAGGTCA
CCCCT
dot-bracket secondary structure
(
(.(((((.((.((((((((.(
(((..(((...((((((..(...(.((((...)))).)...)..))))))...)))..)))).
)))))))).))))))
).)).
SIMILARITIES
miRBase
aqc-MIR398a
:
0.000001
PMRD
aqc-miR398a
:
0.000001
microPC
miR398
:
1e-40
UniProt
no hits
RFAM
MIR398: 0.0004
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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