ABOUT THIS RECORDspecies: Eucalyptus globulus
source: microPC, original name: miR399
Taxonomy by NCBI:
Eucalyptus globulus Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCT miRNA* GGCTTCTCTACTTTGGCAAC mismatches: 3 bulges: 0 |
pre-miRNA
AGGGCTTCTCTACTTTGGCAACACATGTCAATGATGACGACGACGGAGAAGTCGAACGGATGCCGTCCAGTCATCGACGACTTGCCAAAGGAGAGTTGCC
CT
dot-bracket secondary structure
(((((..((((.(((((((((.....(((..(((((((...(((((....(((.....))).)))))..)))))))..)))))))))))).))))..)))
))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGGCTTCTCTACTTTGGCAACACATGTCAATGATGACGACGACGGAGAAGTCGAACGGATGCCGTCCAGTCATCGACGACTTGCCAAAGGAGAGTTGCC
CT
dot-bracket secondary structure
(((((..((((.(((((((((.....(((..(((((((...(((((....(((.....))).)))))..)))))))..)))))))))))).))))..)))
))
SIMILARITIES| miRBase vvi-MIR399b: 0.000001 PMRD vvi-miR399b: 0.000001 microPC miR399: 4e-53 | UniProt no hits RFAM mir-399: 0.00009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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