miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST046620
species: Solanum lycopersicum
miRNA family: MIR172
source: microPC, original name: miR172

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCTTGATGATGCTGCAT

miRNA*
 GTGGCATAATCAAGATTCAC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATG
CTGCAT

dot-bracket secondary structure
(((..((((.((((((((((.(((((...(((.(((((..(((((.(((((.....))))))))))..)...)))).)))))))).)))))))))).)))
)..)))


SIMILARITIES
miRBase sly-MIR172a: 2e-55

PMRD sly-miR172a: 2e-55

microPC miR172: 2e-54		UniProt no hits

RFAM mir-172: 0.0004

Identical with: sly-MIR172a from miRBase (MNEST041542)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence




Liczniki na strone;