ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR172
source: microPC, original name: miR172
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCTTGATGATGCTGCAT miRNA* GTGGCATAATCAAGATTCAC mismatches: 3 bulges: 0 |
pre-miRNA
TATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATG
CTGCAT
dot-bracket secondary structure
)(((..((((.((((((((((.(((((...(((.(((((..(((((.(((((.....))))))))))..)...)))).)))))))).)))))))))).)))
)..)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
TATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATG
CTGCAT
dot-bracket secondary structure
)(((..((((.((((((((((.(((((...(((.(((((..(((((.(((((.....))))))))))..)...)))).)))))))).)))))))))).)))
)..)))
SIMILARITIES| miRBase sly-MIR172a: 2.0E-55 PMRD sly-miR172a: 2.0E-55 microPC miR172: 2.0E-54 | UniProt no hits RFAM 2mir-172: 0.0004 |
Identical with: sly-MIR172a from miRBase (MNEST041542), sly-miR172a from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
