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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST046620
species: Solanum lycopersicum
miRNA family: MIR172
source: microPC, original name: miR172

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCTTGATGATGCTGCAT

miRNA*
 GTGGCATAATCAAGATTCAC

mismatches: 3
bulges: 0
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pre-miRNA
 ATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATG
CTGCAT

dot-bracket secondary structure
(((..((((.((((((((((.(((((...(((.(((((..(((((.(((((.....))))))))))..)...)))).)))))))).)))))))))).)))
)..)))


SIMILARITIES
miRBase sly-MIR172a: 2e-55

PMRD sly-miR172a: 2e-55

microPC miR172: 2e-54		UniProt no hits

RFAM mir-172: 0.0004

Identical with: sly-MIR172a from miRBase (MNEST041542)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence




Liczniki na strone;