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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST046620
species: Solanum lycopersicum
miRNA family: MIR172
source: microPC, original name: miR172

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCTTGATGATGCTGCAT

miRNA*
 GTGGCATAATCAAGATTCAC

mismatches: 3
bulges: 0
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pre-miRNA
 ATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATG
CTGCAT

dot-bracket secondary structure
(((..((((.((((((((((.(((((...(((.(((((..(((((.(((((.....))))))))))..)...)))).)))))))).)))))))))).)))
)..)))


SIMILARITIES
miRBase sly-MIR172a: 2e-55

PMRD sly-miR172a: 2e-55

microPC miR172: 2e-54		UniProt no hits

RFAM mir-172: 0.0004

Identical with: sly-MIR172a from miRBase (MNEST041542)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence




Liczniki na strone;