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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST046906
species: Avena sativa
source: PMRD, original name: asa-miR1122

Taxonomy by NCBI:
Avena sativa Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTCCCTCCGTCACAAAAAGGAT

miRNA*
 CCTTTTCGGGACGGAGGGAGTACA

mismatches: 2
bulges: 0
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pre-miRNA
 AATGCTAGTACGAAATTTTGAACTACTCCCTCCGTCACAAAAAGGATGTCTCAAGTTTGTTTGAATTTGGACGAATCTATATATTAAATAGTGTCTAGAT
ACATCCAAGTTTAGACAAATTTGATACATCCTTTTCGGGACGGAGGGAGTACATGTTTGGACAGGTTGTGGTGAAACCG

dot-bracket secondary structure
.....((.(((((...((..((((((((((((((((.(.((((((((((.(((((((((((((((((((((.(.(((((.(((((....))))).)))))
.).))))))))))))))))))))).)))))))))).).)))))))))))))...)))..))....))))).))......


SIMILARITIES
miRBase osa-MIR1862a: 0.0006

PMRD bsy-miR1122: 0.000000000002

microPC no hits		UniProt no hits

RFAM MIR1122: 6e-72

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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