miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST048643
species: Helianthus annuus
miRNA family: MIR157
source: PMRD, original name: han-miR157b

Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGAGAGCAC

miRNA*
 GCTCCGCTTCTTCCCATCAA

mismatches: 6
bulges: 3
View larger
pre-miRNA
 TTGACAGAAGAGAGAGAGCACGGTATGCTTTTGCGTTGGAACATGCATACGAAAGTAACTAATCATACGATAAATTATCAAAACTACTGTCGATAGAGTA
ATTAGGAAAACAAACCTTGATGAAAAACACCGGCTGTGTGCTGGGAATTGCGTGTGGTTTCCCAAATAGAGTTCAAAGCAGGTTCGGGTTGAACCAGTTC
AGGAACATTGTTAGACACAAAACTTATTTGATGTTGCCCATCATAAAATGATGAAGACTGACTTCTTGAGTTAAAGTGGACAGTTTCTTTTTCTTTTTGT
GGCTTTCGGCGACGGGCATTGTGGTCAGAAAGCCTCTGGCGACAGCTCCGCTTCTTCCCATCAA

dot-bracket secondary structure
.(((..((((((.(.((((..((((.(.(((((.(((..((((....(((....)))...(((((((((.....((((((..(((.(((....)))))).
...(((........)))))))))......(((((.....)))))......)))))))))...........((((..(((.(((((.....))))).))).
..))))..)))).))).)))))).))))...(((((((....((((((.((.((((((((.((.(((......))).)).)))..))))).)).))))))
((((((((((.(((.....))).))).)))))))...))))))))))))..))))))...))).


SIMILARITIES
miRBase far-MIR529: 0.0003

PMRD han-miR156: 0

microPC miR157: 0.0003		UniProt sp|Q6H509|SPL4_ORYSJ: 0.000000001

RFAM no hits

Identical with: han-miR156 from PMRD (MNEST048641)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record




Liczniki na strone;