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Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Oryctolagus cuniculus, Cavia porcellus, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST004928
species: Mus musculus
miRNA family: mir-1839
source: miRNEST

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGGTAGATAGAACAGGTCTTG

miRNA*
 AGACCTACTTATCTACCAACA

mismatches: 4
bulges: 1
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pre-miRNA
 TCCTACATGAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCCATTGC

dot-bracket secondary structure
.............(((((((((...((((((((.((....))......))))))))..)))))))))............


SIMILARITIES
miRBase mmu-mir-1839: 8e-35

PMRD no hits

microPC no hits		UniProt no hits

RFAM SCARNA15: 9e-32		most similar mature miRNAs

Identical with: eca-mir-1839 from miRBase (MNEST027309)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence




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