ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGAACGGTTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
TGTAATTTTCGTATCGTGTCTGATGTTGGAACGGTTCAATCAAATCAAATCTCCTATGAATTGGGTCTTTTAATTTGATTGAGCCGTGCCAATATCGACG
ATTGACGTAAACTTTT
dot-bracket secondary structure
.....(((.(((....((((.((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).))))))))))))
....))).))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTAATTTTCGTATCGTGTCTGATGTTGGAACGGTTCAATCAAATCAAATCTCCTATGAATTGGGTCTTTTAATTTGATTGAGCCGTGCCAATATCGACG
ATTGACGTAAACTTTT
dot-bracket secondary structure
.....(((.(((....((((.((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).))))))))))))
....))).))).....
SIMILARITIES| miRBase rco-MIR171e: 0.0000000000001 PMRD vvi-miR171i: 0.000000000002 microPC miR171: 5e-37 | UniProt no hits RFAM MIR171_1: 0.000000000002 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045880) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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