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Species belonging to selected taxon:

Cucumis melo subsp. melo



ABOUT THIS RECORD

ID: MNEST000495
species: Cucumis melo subsp. melo
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TGTTGGAACGGTTCAATCAAA

mismatches: 1
bulges: 0

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pre-miRNA
TGTAATTTTCGTATCGTGTCTGATGTTGGAACGGTTCAATCAAATCAAATCTCCTATGAATTGGGTCTTTTAATTTGATTGAGCCGTGCCAATATCGACG
ATTGACGTAAACTTTT


dot-bracket secondary structure
.....(((.(((....((((.((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).))))))))))))
....))).))).....



SIMILARITIES
miRBase rco-MIR171e: 0.0000000000001

PMRD vvi-miR171i: 0.000000000002

microPC miR171: 5e-37
UniProt no hits

RFAM MIR171_1: 0.000000000002
most similar mature miRNAs

Identical with: miR171 from microPC (MNEST045880)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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