ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-103
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCAGCATTGTACAGGGCTAT miRNA* CTTCTTTACAGTGCTGCCTTG mismatches: 4 bulges: 1 |
pre-miRNA
CACCTCAGCAGAGCTGTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGA
ATGGGCTGCCCTTAG
dot-bracket secondary structure
.....((((...))))((((.((.((((((..((((.(((((((((((.(((..((......)))))))))))))))).))))...)))))).)).))))
..(((...)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
CACCTCAGCAGAGCTGTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGA
ATGGGCTGCCCTTAG
dot-bracket secondary structure
.....((((...))))((((.((.((((((..((((.(((((((((((.(((..((......)))))))))))))))).))))...)))))).)).))))
..(((...)))....
SIMILARITIES| miRBase mmu-mir-103-2: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-103: 1e-34 | most similar mature miRNAs |
Identical with: eca-mir-103 from miRBase (MNEST027000) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
