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Species belonging to selected taxon:

Mus musculus, Rattus norvegicus



ABOUT THIS RECORD

ID: MNEST005116
species: Mus musculus
miRNA family: mir-103
source: miRNEST

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCAGCATTGTACAGGGCTAT

miRNA*
CTTCTTTACAGTGCTGCCTTG

mismatches: 4
bulges: 1

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pre-miRNA
CACCTCAGCAGAGCTGTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGA
ATGGGCTGCCCTTAG


dot-bracket secondary structure
.....((((...))))((((.((.((((((..((((.(((((((((((.(((..((......)))))))))))))))).))))...)))))).)).))))
..(((...)))....



SIMILARITIES
miRBase mmu-mir-103-2: 1e-43

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-103: 1e-34
most similar mature miRNAs

Identical with: eca-mir-103 from miRBase (MNEST027000)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence





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