ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR159
source: PMRD, original name: pta-miR159a
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGGGAGCTCCA miRNA* GGAGCTCCCTTCAGTCCAACC mismatches: 0 bulges: 1 |
pre-miRNA
CGATGTGTTGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCAGCGGTGGTTCAGCTGCTGATTCATGCATTCTACTTCCCTGTCCGTGACTCTCCAGCAGC
CTGAACAAATCAATCAATCGACCTGCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTACTGTCACTAAACACGCATTTCTTGGATTGAAGGGAGC
TCCACTTATC
dot-bracket secondary structure
)((((.((.(((((((((((((((((((..((.((.(((..((.((..((.((.((.(((..((((((((.(((((..((((((..((......))((((.
.(((.............)))..))))..))))))..))))).))))))))..))).)).)).))..)).))..))).)).))..))))))))))))))))
))))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
CGATGTGTTGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCAGCGGTGGTTCAGCTGCTGATTCATGCATTCTACTTCCCTGTCCGTGACTCTCCAGCAGC
CTGAACAAATCAATCAATCGACCTGCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTACTGTCACTAAACACGCATTTCTTGGATTGAAGGGAGC
TCCACTTATC
dot-bracket secondary structure
)((((.((.(((((((((((((((((((..((.((.(((..((.((..((.((.((.(((..((((((((.(((((..((((((..((......))((((.
.(((.............)))..))))..))))))..))))).))))))))..))).)).)).))..)).))..))).)).))..))))))))))))))))
))))).))))
SIMILARITIES| miRBase pta-MIR159a: 3.0E-117 PMRD pta-miR319: 7.0E-115 microPC miR319: 2.0E-108 | UniProt no hits RFAM 9MIR159: 1.0E-5 |
Identical with: pta-MIR319 from miRBase (MNEST039424), pta-miR319 from PMRD , pta-MIR159a from miRBase , miR319 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
