ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR950
source: PMRD, original name: pta-miR950b
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTCCTCGGTGGTTTAT miRNA* AAACCATCGTGGAGCAGATG mismatches: 3 bulges: 0 |
pre-miRNA
GGAAGGTGATCTTTACATCAGGTCCTCGGTGGTTTATTGCTCATCGTTTGTTTACGATAAACCATCGTGGAGCAGATGAAAAGAGCACCTCC
dot-bracket secondary structure
(((.((((.(((((.((((.(.(((.(((((((((((((..((.....))....))))))))))))).))).).)))).))))).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
GGAAGGTGATCTTTACATCAGGTCCTCGGTGGTTTATTGCTCATCGTTTGTTTACGATAAACCATCGTGGAGCAGATGAAAAGAGCACCTCC
dot-bracket secondary structure
(((.((((.(((((.((((.(.(((.(((((((((((((..((.....))....))))))))))))).))).).)))).))))).)))))))
SIMILARITIES| miRBase pta-MIR950b: 3e-47 PMRD pta-miR950a: 4e-40 microPC miR950: 5e-21 | UniProt no hits RFAM no hits |
Identical with: pta-MIR950b from miRBase (MNEST039440) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
