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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST051579
species: Pinus taeda
miRNA family: MIR950
source: PMRD, original name: pta-miR950b

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAGGTCCTCGGTGGTTTAT

miRNA*
AAACCATCGTGGAGCAGATG

mismatches: 3
bulges: 0

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pre-miRNA
GGAAGGTGATCTTTACATCAGGTCCTCGGTGGTTTATTGCTCATCGTTTGTTTACGATAAACCATCGTGGAGCAGATGAAAAGAGCACCTCC

dot-bracket secondary structure
(((.((((.(((((.((((.(.(((.(((((((((((((..((.....))....))))))))))))).))).).)))).))))).)))))))


SIMILARITIES
miRBase pta-MIR950b: 3e-47

PMRD pta-miR950a: 4e-40

microPC miR950: 5e-21
UniProt no hits

RFAM no hits

Identical with: pta-MIR950b from miRBase (MNEST039440)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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