ABOUT THIS RECORDspecies: Bos taurus
miRNA family: miR-1408
source: miRNEST
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGGAGGGAGGGTGGTGGCA miRNA* CCACCAGCTGTCTATCACGTG mismatches: 4 bulges: 0 |
pre-miRNA
GTGAGTGTGGAGGGAGGGTGGTGGCAGGGAAGGGATGGGATTGGTCTGCTTCTGGGATCTCATTCCTCTCCTCTCCACGCAGCTCGAGCAGAGGGGCAGG
CTGCAGAAGTCAGTGGCAAAGGAGATCCAGGCCCCAGACCCGGCTGACATTCGAATCCTACGTGGCCACCAGCTGTCTATCACGTGTT
dot-bracket secondary structure
.....(((((.(((.((.(((((((......(((((..((...(((.(((((((((.(((......((((((..((((((((((...((......)).))
))))........))))...))))))...))).))))))...))).)))..))..))))).....))))))).)).))).)))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGAGTGTGGAGGGAGGGTGGTGGCAGGGAAGGGATGGGATTGGTCTGCTTCTGGGATCTCATTCCTCTCCTCTCCACGCAGCTCGAGCAGAGGGGCAGG
CTGCAGAAGTCAGTGGCAAAGGAGATCCAGGCCCCAGACCCGGCTGACATTCGAATCCTACGTGGCCACCAGCTGTCTATCACGTGTT
dot-bracket secondary structure
.....(((((.(((.((.(((((((......(((((..((...(((.(((((((((.(((......((((((..((((((((((...((......)).))
))))........))))...))))))...))).))))))...))).)))..))..))))).....))))))).)).))).)))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q91WM3|U3IP2_MOUSE: 0.00000000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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