miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Danio rerio, Pimephales promelas, Cyprinus carpio, Misgurnus anguillicaudatus, Rutilus rutilus



ABOUT THIS RECORD

ID: MNEST005486
species: Danio rerio
miRNA family: mir-133
source: miRNEST

Taxonomy by NCBI:
Danio rerio Danio Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCTGGTTGAAGGGGACCAA

miRNA*
 GGTTCCATTTGACCAGCCACA

mismatches: 2
bulges: 0
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pre-miRNA
 TCACGACGCAGTAGCTGGTTGAAGGGGACCAAACCTCGCAGAAACACCTGACTTGGTTCCATTTGACCAGCCACAGCAAGGCG

dot-bracket secondary structure
.......((.((.((((((((((.((((((((......(((......)))..)))))))).)))))))))).)).))......


SIMILARITIES
miRBase dre-mir-133b: 2e-41

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-133: 2e-33		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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