ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: MIRf1372
source: miRNEST
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGAGCTTCTCGAAGATGTCG miRNA* GCGTGCTTCGCAAGCTCGCCG mismatches: 1 bulges: 2 |
pre-miRNA
CCCTCCGAGACGGCGTGCTTCGCAAGCTCGCCGGGGAGGACCAGGCGGACAGAGGTCTGAATCTCCCGGGAGGTAATGGTAGGCTTCTTGTTGTAGCGGG
CAAGCCTGGACGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAA
dot-bracket secondary structure
........((((((((.(((((.(((((((((.((((((.((((((..(((((((((((.(((((....))))).....)))))))).)))(((.....)
)).))))))...)))))).)))))))))..))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCCTCCGAGACGGCGTGCTTCGCAAGCTCGCCGGGGAGGACCAGGCGGACAGAGGTCTGAATCTCCCGGGAGGTAATGGTAGGCTTCTTGTTGTAGCGGG
CAAGCCTGGACGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAA
dot-bracket secondary structure
........((((((((.(((((.(((((((((.((((((.((((((..(((((((((((.(((((....))))).....)))))))).)))(((.....)
)).))))))...)))))).)))))))))..))))))))))))).......
SIMILARITIES| miRBase no hits PMRD osa-miRf10132-akr: 5e-41 microPC no hits | UniProt sp|O22582|H2B_GOSHI: 9e-20 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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