ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-29
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCGGT miRNA* CGATTTCTCCTGGTGTTCAGA mismatches: 3 bulges: 1 |
pre-miRNA
TCCATCTCTTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTAGGGGGAAAAG
dot-bracket secondary structure
....(((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCATCTCTTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTAGGGGGAAAAG
dot-bracket secondary structure
....(((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))).....
SIMILARITIES| miRBase rno-mir-3556b: 5e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 6e-18 | most similar mature miRNAs |
Identical with: eca-mir-29c from miRBase (MNEST026973) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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