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Species belonging to selected taxon:

Rattus norvegicus



ABOUT THIS RECORD

ID: MNEST005737
species: Rattus norvegicus
miRNA family: mir-29
source: miRNEST

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCACCATTTGAAATCGGT

miRNA*
CGATTTCTCCTGGTGTTCAGA

mismatches: 3
bulges: 1

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pre-miRNA
TCCATCTCTTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTAGGGGGAAAAG

dot-bracket secondary structure
....(((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))).....


SIMILARITIES
miRBase rno-mir-3556b: 5e-49

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-29: 6e-18
most similar mature miRNAs

Identical with: eca-mir-29c from miRBase (MNEST026973)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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