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Species belonging to selected taxon:
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Pseudoroegneria spicata
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST005930
species:
Triticum aestivum
miRNA family:
MIR1123
source:
miRNEST
Taxonomy by NCBI:
Triticum aestivum
Triticum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCGTGAGACCTGGTCTTATA
miRNA*
TGAGACCAAGTCTCATATAAA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TGCCAGTGGGAAAAAAATTATA
TGAGACCAAGTCTCATATAAA
TCAGGTGAGACCCGCCTTGATGAATGACAGGTGGCATTCACCCCTGATATCAGGTGG
GGGGTGGGGTGAATGATCTGTGATTTGTGAATGTCACGTGTCATCCATTAAAATGGGTCTCACCTGCTAA
TCCGTGAGACCTGGTCTTATA
GAATTGTTT
TCCATGCCAC
dot-bracket secondary structure
.....((((((((..((((.((
((((((((.(((((((.....
.(((((((((((((..((((((.((((((.(((((((((((((((.((.....)).)
)))))))..((...((((...))))..)).))))))).)))))).))))))..)))))))))))))....
...))))))).))))))))))
.)))).)))
))))).....
SIMILARITIES
miRBase
tae-MIR1123
:
2e-38
PMRD
tae-miR1123
:
2e-38
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record