miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST005930
species: Triticum aestivum
miRNA family: MIR1123
source: miRNEST

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCGTGAGACCTGGTCTTATA

miRNA*
TGAGACCAAGTCTCATATAAA

mismatches: 4
bulges: 0

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pre-miRNA
TGCCAGTGGGAAAAAAATTATATGAGACCAAGTCTCATATAAATCAGGTGAGACCCGCCTTGATGAATGACAGGTGGCATTCACCCCTGATATCAGGTGG
GGGGTGGGGTGAATGATCTGTGATTTGTGAATGTCACGTGTCATCCATTAAAATGGGTCTCACCTGCTAATCCGTGAGACCTGGTCTTATAGAATTGTTT
TCCATGCCAC


dot-bracket secondary structure
.....((((((((..((((.((((((((((.(((((((......(((((((((((((..((((((.((((((.(((((((((((((((.((.....)).)
)))))))..((...((((...))))..)).))))))).)))))).))))))..))))))))))))).......))))))).)))))))))).)))).)))
))))).....



SIMILARITIES
miRBase tae-MIR1123: 2e-38

PMRD tae-miR1123: 2e-38

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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