ABOUT THIS RECORDspecies: Fagus sylvatica
miRNA family: MIRf175
source: miRNEST
Taxonomy by NCBI:
Fagus sylvatica Fagus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTGAAGGAGATGGAGGACGA miRNA* GCCTCCCTTGCCGTCTCTG mismatches: 4 bulges: 2 |
pre-miRNA
GGACCTTGGCTGTCACTCAGTTACGAATACTCGCCTCCCTTGCCGTCTCTGCTTTTTGAGAGAAATGGAGCAAGACGATGTGGACATGGCTGCCTCAGAG
AACACCAACGAAGCGGAACTCGACGACATGAAGAAGCGGTTGAAGGAGATGGAGGACGAAGCAGCTGCTCTACGAGAGATGCAAGCCA
dot-bracket secondary structure
......((((((.....)))))).......((((((((.((.((.((.(((((((((..(((..(((..(((......)))...)))..((((.((....
.........)).))))..))).........)))))))))..)).)).)).))))).))).(((....((((...)))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGACCTTGGCTGTCACTCAGTTACGAATACTCGCCTCCCTTGCCGTCTCTGCTTTTTGAGAGAAATGGAGCAAGACGATGTGGACATGGCTGCCTCAGAG
AACACCAACGAAGCGGAACTCGACGACATGAAGAAGCGGTTGAAGGAGATGGAGGACGAAGCAGCTGCTCTACGAGAGATGCAAGCCA
dot-bracket secondary structure
......((((((.....)))))).......((((((((.((.((.((.(((((((((..(((..(((..(((......)))...)))..((((.((....
.........)).))))..))).........)))))))))..)).)).)).))))).))).(((....((((...)))).)))......
SIMILARITIES| miRBase no hits PMRD ath-miRf10240-akr: 0.0006 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
