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Species belonging to selected taxon:

Fagus sylvatica, Quercus petraea, Quercus robur



ABOUT THIS RECORD

ID: MNEST000625
species: Fagus sylvatica
miRNA family: MIRf175
source: miRNEST

Taxonomy by NCBI:
Fagus sylvatica Fagus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTTGAAGGAGATGGAGGACGA

miRNA*
GCCTCCCTTGCCGTCTCTG

mismatches: 4
bulges: 2

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pre-miRNA
GGACCTTGGCTGTCACTCAGTTACGAATACTCGCCTCCCTTGCCGTCTCTGCTTTTTGAGAGAAATGGAGCAAGACGATGTGGACATGGCTGCCTCAGAG
AACACCAACGAAGCGGAACTCGACGACATGAAGAAGCGGTTGAAGGAGATGGAGGACGAAGCAGCTGCTCTACGAGAGATGCAAGCCA


dot-bracket secondary structure
......((((((.....)))))).......((((((((.((.((.((.(((((((((..(((..(((..(((......)))...)))..((((.((....
.........)).))))..))).........)))))))))..)).)).)).))))).))).(((....((((...)))).)))......



SIMILARITIES
miRBase no hits

PMRD ath-miRf10240-akr: 0.0006

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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