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Species belonging to selected taxon:
Fagus sylvatica
,
Quercus petraea
,
Quercus robur
ABOUT THIS RECORD
ID:
MNEST000630
species:
Fagus sylvatica
miRNA family:
MIR162
source:
miRNEST
Taxonomy by NCBI:
Fagus sylvatica
Fagus
Fagaceae
Fagales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG
miRNA*
GGAGGCAGCGGTTCATCGATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
TGGTTGGTGGGTATGATAGGGTGAAGTCACT
GGAGGCAGCGGTTCATCGATC
TCTTCCTGGGAAATTTGTTGTGACACTAACACAAACATGAATCGG
TCG
ATAAACCTCTGCATCCAG
CGCTCACTTCTCTCTCTCTCTCTCTCTC
dot-bracket secondary structure
.....((.(((...((.((((.(((((..((
(((.((((.((((.(((((((
..(((.((.........(((((.......))))).)).)))..))
)))
)).)))).)))).)))))
.....)))))...)))).)).))).)).
SIMILARITIES
miRBase
ghr-MIR162a
:
2e-31
PMRD
ghr-miR162a
:
2e-31
microPC
miR162
:
6e-28
UniProt
no hits
RFAM
MIR162_2: 4e-20
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record