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Species belonging to selected taxon:

Fagus sylvatica, Quercus petraea, Quercus robur



ABOUT THIS RECORD

ID: MNEST000630
species: Fagus sylvatica
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Fagus sylvatica Fagus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGAGGCAGCGGTTCATCGATC

mismatches: 3
bulges: 0

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pre-miRNA
TGGTTGGTGGGTATGATAGGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGGAAATTTGTTGTGACACTAACACAAACATGAATCGGTCG
ATAAACCTCTGCATCCAG
CGCTCACTTCTCTCTCTCTCTCTCTCTC


dot-bracket secondary structure
.....((.(((...((.((((.(((((..(((((.((((.((((.(((((((..(((.((.........(((((.......))))).)).)))..)))))
)).)))).)))).)))))
.....)))))...)))).)).))).)).



SIMILARITIES
miRBase ghr-MIR162a: 2e-31

PMRD ghr-miR162a: 2e-31

microPC miR162: 6e-28
UniProt no hits

RFAM MIR162_2: 4e-20
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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