ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCATGGTTCAATCAAC mismatches: 0 bulges: 0 |
pre-miRNA
TACTGGCTTGGAGAGTGCGATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGAT
CTGATTGAGCCGTGCCAATATCGCAAGCTTCCTGCCTAG
dot-bracket secondary structure
....(((..((((..((((((((((((((((((((((((...(((((((((.....((((.(((.((.((....)).)).)))))))....)))))))))
.))))))))))))))))))))))))...)))).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACTGGCTTGGAGAGTGCGATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGAT
CTGATTGAGCCGTGCCAATATCGCAAGCTTCCTGCCTAG
dot-bracket secondary structure
....(((..((((..((((((((((((((((((((((((...(((((((((.....((((.(((.((.((....)).)).)))))))....)))))))))
.))))))))))))))))))))))))...)))).)))...
SIMILARITIES| miRBase far-MIR171: 6e-68 PMRD osa-miR171f: 0.0000000001 microPC miR171: 3e-54 | UniProt no hits RFAM MIR171_1: 0.000000002 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST044910) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
