ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: mir-650
source: miRNEST
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGACAGTGCTGTGGGGAA miRNA* CGTCCACAGCAGCTCTCTAAA mismatches: 2 bulges: 2 |
pre-miRNA
ATTATCTGTCTTGGAGACAGTGCTGTGGGGAAATCAAAGTTGATGGAACGCCTTTCTAATGGATGGATTTCGTCCACAGCAGCTCTCTAAATTTGCTCT
dot-bracket secondary structure
..........(((((((...(((((((((((((((....(((.(((((.....))))).)))...)))))).)))))))))..))))))).........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTATCTGTCTTGGAGACAGTGCTGTGGGGAAATCAAAGTTGATGGAACGCCTTTCTAATGGATGGATTTCGTCCACAGCAGCTCTCTAAATTTGCTCT
dot-bracket secondary structure
..........(((((((...(((((((((((((((....(((.(((((.....))))).)))...)))))).)))))))))..))))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q5R573|RBL2A_PONAB: 0.00003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
