ABOUT THIS RECORDspecies: Salmo salar
miRNA family: miR-1952
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCACCATCCTTCTGGTCA miRNA* ACTGGAAGGAGCTGTGGATAGA mismatches: 5 bulges: 1 |
pre-miRNA
AAGTGCCAGTCGGACTGGAAGGAGCTGTGGATAGAAGATGCCTTCTGGCGGTTCCTCTTCTCCACCATCCTTCTGGTCATCATGTTCCT
dot-bracket secondary structure
............(((((((((((...(((((.(((.((.(((....)))...)).)))..)))))..)))))))))))...........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGTGCCAGTCGGACTGGAAGGAGCTGTGGATAGAAGATGCCTTCTGGCGGTTCCTCTTCTCCACCATCCTTCTGGTCATCATGTTCCT
dot-bracket secondary structure
............(((((((((((...(((((.(((.((.(((....)))...)).)))..)))))..)))))))))))...........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q8BKU8|TM87B_MOUSE: 0.00000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
